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library scikit  (Oxford Instruments)


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    Structured Review

    Oxford Instruments library scikit
    Library Scikit, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 44473 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/library+scikit/Imaris/pm38266645-480-72-76
    Average 99 stars, based on 44473 article reviews
    library scikit - by Bioz Stars, 2026-10
    99/100 stars

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    Software:

    Article Title: A septal-ventral tegmental area circuit drives exploratory behavior.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-TH, rabbit polyclonal Millipore Cat.: #AB152; RRID: AB_390204 Anti-synapsin I-Cy5, mouse monoclonal prelabeled SySy Cat.: #106 011C5; RRID: AB_2619761 Anti-Bassoon, rabbit polyclonal Custom-made N/A Anti-Shank3, guinea pig polyclonal antiserum SySy Cat.: #162304; RRID: AB_2619863 Donkey Anti-rabbit Alexa Fluor 405 Abcam Cat.: #ab175649; RRID: AB_2715515 Donkey Anti-rabbit Alexa Fluor 594 Abcam Cat.: #ab150076; RRID: AB_2782993 Goat Anti-guinea pig-Alexa Fluor 647 ThermoFisher Scientific Cat.: #A-21450; RRID: AB_2535867 Bacterial and virus strains AAV1.Syn.Flex.GCaMP6s.WPRE.SV40 Chen et al.53 Addgene, Cat.: #100845 AAV1 or AAV9-EF1a-double floxed-hChR2 (H134R)-EYFP-WPRE-HGHpa gift from Karl Deisseroth Addgene, Cat.: #20298 AAV9-FLEX-Arch-GFP Chow et al.54 Addgene, Cat.: #22222 AAV1-EF1a-DIO EYFP gift from Karl Deisseroth Addgene, Cat.: #27056 AAV1-FLEX-tdTomato gift from Edward Boyden Addgene, Cat.: #28306 AAV2.1-Ef1a-double floxed-hChR2 (H134R)-EYFP-WPR Wu et al.55 Addgene, Cat.: #20940 Chemicals, peptides, and recombinant proteins TTX Tocris Cat.: #1069 4-AP Sigma Cat.: #A78403-25G NBQX Tocris Cat.: #0373 D-AP5 Tocris Cat.: #0106 Lidocaine Sigma Cat.: #L5647-15G PFA Sigma Cat.: #158127-500G NaCl Sigma Cat.: #S3014-1KG Sucrose Sigma Cat.: #S0389-500G KCl Sigma Cat.: #P9541-500G NaHPO4 Sigma Cat.: #S8282-500G NaHCO3 Sigma Cat.: #S5761-500G CaCl2 Sigma Cat.: #C5670-100G MgCl2 Sigma Cat.: #M2670-500G MgSO4 Sigma Cat.: #230391-1KG Glucose Sigma Cat.: #G8270-1KG K-gluconate Sigma Cat.: #G4500-100G HEPES-acid Sigma Cat.: #H3375-250G Phosphocreatine Sigma Cat.: #P7936-1G EGTA Sigma Cat.: #E3889-10G Biocytin Sigma Cat.: #B4261-25MG Aqua-Poly/mount Polysciences Cat.: #18606-20 Normal Donkey Serum (NDS) Jackson Cat.: #017-000-121 Triton X 100 Roth Cat.: #3051.4 Experimental models: Organisms/strains Mouse: Vglut2-ires-cre/Slc17a6tm2(cre)Lowl/J The Jackson Lab Strain #: 016963; RRID:IMSR_JAX:016963 (Continued on next page) Neuron 112, 1020–1032.e1–e7, March 20, 2024 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Software and algorithms Pylon Viewer Basler https://www2.baslerweb.com/en/ downloads/software-downloads/ IGOR Pro WaveMetrics RRID: SCR_000325 Prism GraphPad RRID: SCR_002798 DeepLabCut Mathis et al.26 https://github.com/DeepLabCut VAME Luxem et al.28 https://github.com/LINCellularNeuroscience/VAME DeepGraphPose Wu et al.55 https://github.com/paninski-lab/deepgraphpose MouseFlow Barnstedt et al.27 https://github.com/obarnstedt/MouseFlow Custom written MATLAB code this article https://doi.org/10.5281/zenodo.10407377 Custom written Python code this article https://doi.org/10.5281/zenodo.10406017 OpenCV library OpenCV RRID: SCR_015526 Elephant library Elephant RRID: SCR_003833 Scipy library Scipy RRID: SCR_008058 Scikit-learn library Scikit-learn RRID: SCR_002577 Imaris Bitplane RRID: SCR_007370 Huygens Professional Scientific Volume Imaging RRID: SCR_014237 Fiji/ImageJ NIH RRID: SCR_002285; SCR_003070 MATLAB Mathworks RRID: SCR_000325 Python Python RRID: SCR_008394 Other NI board National Instruments NI USB-6009 Fiberphotometry system NPI Electronic https://www.npielectronic.com/ product/fiberoptometer/ .. Further information and requests for resources, reagents, and code should be addressed to and will be fulfilled by the Lead Contact, Stefan Remy (Stefan.Remy@lin-magdeburg.de).

    Imaging:

    Article Title: A septal-ventral tegmental area circuit drives exploratory behavior.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-TH, rabbit polyclonal Millipore Cat.: #AB152; RRID: AB_390204 Anti-synapsin I-Cy5, mouse monoclonal prelabeled SySy Cat.: #106 011C5; RRID: AB_2619761 Anti-Bassoon, rabbit polyclonal Custom-made N/A Anti-Shank3, guinea pig polyclonal antiserum SySy Cat.: #162304; RRID: AB_2619863 Donkey Anti-rabbit Alexa Fluor 405 Abcam Cat.: #ab175649; RRID: AB_2715515 Donkey Anti-rabbit Alexa Fluor 594 Abcam Cat.: #ab150076; RRID: AB_2782993 Goat Anti-guinea pig-Alexa Fluor 647 ThermoFisher Scientific Cat.: #A-21450; RRID: AB_2535867 Bacterial and virus strains AAV1.Syn.Flex.GCaMP6s.WPRE.SV40 Chen et al.53 Addgene, Cat.: #100845 AAV1 or AAV9-EF1a-double floxed-hChR2 (H134R)-EYFP-WPRE-HGHpa gift from Karl Deisseroth Addgene, Cat.: #20298 AAV9-FLEX-Arch-GFP Chow et al.54 Addgene, Cat.: #22222 AAV1-EF1a-DIO EYFP gift from Karl Deisseroth Addgene, Cat.: #27056 AAV1-FLEX-tdTomato gift from Edward Boyden Addgene, Cat.: #28306 AAV2.1-Ef1a-double floxed-hChR2 (H134R)-EYFP-WPR Wu et al.55 Addgene, Cat.: #20940 Chemicals, peptides, and recombinant proteins TTX Tocris Cat.: #1069 4-AP Sigma Cat.: #A78403-25G NBQX Tocris Cat.: #0373 D-AP5 Tocris Cat.: #0106 Lidocaine Sigma Cat.: #L5647-15G PFA Sigma Cat.: #158127-500G NaCl Sigma Cat.: #S3014-1KG Sucrose Sigma Cat.: #S0389-500G KCl Sigma Cat.: #P9541-500G NaHPO4 Sigma Cat.: #S8282-500G NaHCO3 Sigma Cat.: #S5761-500G CaCl2 Sigma Cat.: #C5670-100G MgCl2 Sigma Cat.: #M2670-500G MgSO4 Sigma Cat.: #230391-1KG Glucose Sigma Cat.: #G8270-1KG K-gluconate Sigma Cat.: #G4500-100G HEPES-acid Sigma Cat.: #H3375-250G Phosphocreatine Sigma Cat.: #P7936-1G EGTA Sigma Cat.: #E3889-10G Biocytin Sigma Cat.: #B4261-25MG Aqua-Poly/mount Polysciences Cat.: #18606-20 Normal Donkey Serum (NDS) Jackson Cat.: #017-000-121 Triton X 100 Roth Cat.: #3051.4 Experimental models: Organisms/strains Mouse: Vglut2-ires-cre/Slc17a6tm2(cre)Lowl/J The Jackson Lab Strain #: 016963; RRID:IMSR_JAX:016963 (Continued on next page) Neuron 112, 1020–1032.e1–e7, March 20, 2024 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Software and algorithms Pylon Viewer Basler https://www2.baslerweb.com/en/ downloads/software-downloads/ IGOR Pro WaveMetrics RRID: SCR_000325 Prism GraphPad RRID: SCR_002798 DeepLabCut Mathis et al.26 https://github.com/DeepLabCut VAME Luxem et al.28 https://github.com/LINCellularNeuroscience/VAME DeepGraphPose Wu et al.55 https://github.com/paninski-lab/deepgraphpose MouseFlow Barnstedt et al.27 https://github.com/obarnstedt/MouseFlow Custom written MATLAB code this article https://doi.org/10.5281/zenodo.10407377 Custom written Python code this article https://doi.org/10.5281/zenodo.10406017 OpenCV library OpenCV RRID: SCR_015526 Elephant library Elephant RRID: SCR_003833 Scipy library Scipy RRID: SCR_008058 Scikit-learn library Scikit-learn RRID: SCR_002577 Imaris Bitplane RRID: SCR_007370 Huygens Professional Scientific Volume Imaging RRID: SCR_014237 Fiji/ImageJ NIH RRID: SCR_002285; SCR_003070 MATLAB Mathworks RRID: SCR_000325 Python Python RRID: SCR_008394 Other NI board National Instruments NI USB-6009 Fiberphotometry system NPI Electronic https://www.npielectronic.com/ product/fiberoptometer/ .. Further information and requests for resources, reagents, and code should be addressed to and will be fulfilled by the Lead Contact, Stefan Remy (Stefan.Remy@lin-magdeburg.de).



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